13FL_C
Programmed cell death 1 ligand 1 · Q9NZQ7 · RCSB 13FL · AF-Q9NZQ7-F1 (v6)
0.9756
TM-score
0.9678
lDDT
0.659
Cα-RMSD Å
96.09
mean pLDDT
0.0338
FRAUD score
96.8%
novelty (max id)
Per-domain breakdown
| Source | Domain | Range | Residues | TM | RMSD Å | mean Cα Δ | Name |
|---|---|---|---|---|---|---|---|
| PAE | PAE:1-290 | 1-290 | 115 | 0.9755 | 0.659 | 0.532 |
All metrics
Global fold agreement
| TM-score (norm. experiment) | 0.9756 |
| TM-score (norm. model) | 0.3924 |
| TM-score (norm. shorter) | 0.9756 |
| TM-score (norm. longer) | 0.3924 |
| Cα-RMSD (Å) | 0.659 |
| backbone-RMSD (Å) | 0.624 |
| all-atom-RMSD (Å) | 1.233 |
| core-RMSD (Å) | 0.569 |
| core fraction | 0.983 |
| GDT_TS | 97.61 |
| GDT_HA | 88.7 |
| MaxSub | 0.9755 |
| structural overlap (3.5 Å) | 1.0 |
Local, superposition-free
| lDDT | 0.9678 |
| contact-map Jaccard | 0.9333 |
| contact precision | 0.9692 |
| contact recall | 0.9618 |
| distance-matrix mean Δ (Å) | 0.3 |
| CAD-score (approx) | 0.8872 |
Backbone & secondary structure
| SS agreement Q3 (%) | 93.91 |
| mean Δφ (°) | 11.9 |
| mean Δψ (°) | 9.3 |
| torsion within 30° (frac) | 0.9217 |
| Rg experiment (Å) | 13.53 |
| Rg model (Å) | 13.57 |
| ΔRg (Å) | 0.04 |
Confidence calibration
| mean pLDDT | 96.09 |
| pLDDT↔lDDT Pearson | 0.155 |
| pLDDT↔lDDT Spearman | 0.172 |
| PAE↔observed Pearson | 0.2347 |
| PAE overconfident frac | 0.0 |
| mean PAE (Å) | 2.544 |
| mean observed error (Å) | 0.297 |
Context & headline
| coverage of model | 0.3966 |
| coverage of experiment | 1.0 |
| seq identity aligned (%) | 99.13 |
| confidently-wrong residue frac | 0.0 |
| FRAUD score | 0.0338 |
Deposited 2026-05-04 · released 2026-06-03 · X-ray · 2.22 Å · closest pre-cutoff chain: 5XXY_3