Release week 2021-03-31
⭐ This week's notable releases
3 novel sequences, 5 confidently wrong. Highlight: Sodium channel modifier 1.
| PDB | Protein | Flags | Why it matters |
|---|---|---|---|
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Sodium channel modifier 1 | novel · 100% confidently wrong | Genuinely unseen sequence (0% identity to anything AlphaFold trained on) — and AlphaFold got the fold wrong despite high confidence. |
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Cysteine-rich PDZ-binding protein | novel · 100% | Genuinely unseen sequence (0% identity to anything AlphaFold trained on). |
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G-patch domain and KOW motifs-containing protein | novel · 100% | Genuinely unseen sequence (0% identity to anything AlphaFold trained on). |
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RING-type E3 ubiquitin-protein ligase PPIL2 | confidently wrong | A close pre-cutoff homolog existed (100% identity to 1ZKC_1) yet AlphaFold confidently missed the fold. |
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RING finger protein 113A | confidently wrong | A close pre-cutoff homolog existed (43% identity to 5GM6_25) yet AlphaFold confidently missed the fold. |
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Repulsive Guidance Molecule B | confidently wrong | A close pre-cutoff homolog existed (97% identity to 4BQ6_2) yet AlphaFold confidently missed the fold. |
Zoomed into the red "confidently wrong" box above (pLDDT ≥ 70, TM < 0.5) — the structures AlphaFold got confidently wrong.
The worst offenders ranked, one row per protein (AlphaFold has one model per sequence, so repeat depositions are collapsed — “×N” marks how many structures of that protein exist; the worst is shown). Each row joins what AlphaFold claimed (blue, pLDDT/100) to what the experiment showed (red, TM-score) — the longer the bar, the bigger the miss. Hover a dot to preview its Cα-deviation ribbon; click to open the full entry.
How to read this
Every point is one experimental protein structure. The horizontal axis is AlphaFold's own confidence in its prediction (mean pLDDT, 0–100). The vertical axis is how well that blind prediction actually matches the experiment (TM-score, 0–1; above 0.5 means the same fold, above 0.9 near-identical). Marker size grows with the FRAUD score (confidence-weighted error).
Cutoff: the shaded red box is the "confidently wrong" zone — AlphaFold was confident (mean pLDDT above 70) yet the fold is wrong (TM-score below 0.5). A predictor that had truly solved folding would leave that box empty.
Take-home: 5 of 124 structures (4.0%) are confidently wrong; median TM-score is 0.947.
Read moreShow less — how each metric is calculated
TM-score: how similar the two 3D shapes are overall, 0–1 (a random pair scores ~0.17, an identical fold ~1). Length-normalised so large and small proteins compare fairly. TM = (1/L) Σᵢ 1/(1 + (dᵢ/d₀)²) — dᵢ is the gap between the i-th aligned Cα atoms after best-fit superposition, and d₀ = 1.24(L−15)^⅓ − 1.8 sets the distance scale for length L. Ref: Zhang & Skolnick, Proteins 2004 doi:10.1002/prot.20264; computed with TM-align, doi:10.1093/nar/gki524.
pLDDT: AlphaFold's own confidence in each residue, 0–100 (higher = surer). It is the model predicting its own accuracy before ever seeing the experiment. We plot the per-structure mean. pLDDT = (1/N) Σᵢ pLDDTᵢ, where pLDDTᵢ is the network's confidence output for residue i.
FRAUD score: the headline number — how wrong the prediction was, weighted by how confident AlphaFold was, so a big error it was sure about counts most. FRAUD = (1/N) Σᵢ (pLDDTᵢ/100) · min(Δᵢ,15)/15, where Δᵢ is residue i's Cα distance from the experiment (Å) after superposition, capped at 15 Å. Runs 0 (perfect) to 1.
Novelty: how little AlphaFold had to go on — 100 minus the highest sequence identity between this protein and any structure released before the 2018-04-30 training cutoff. High = genuinely unseen (100% = nothing similar was ever in the training set). novelty = 100 − maxₚ identity(s, p) over pre-cutoff PDB chains p, with identity = 100 × (matching aligned residues)/(alignment length), from an MMseqs2 search.
Homology: the point colour. High novelty (above 70%) flags the sequence as novel (amber) — AlphaFold had no close template; otherwise a pre-cutoff homolog existed (blue) it could have learned the fold from. novel ⇔ novelty > 70%.
What the metrics mean
TM-score (0–1): overall fold match — above 0.5 is the same fold, above 0.9 near-identical. Cα-RMSD (Å): average backbone distance after best-fit superposition — lower is better (under 2 Å is excellent). lDDT (0–1): local accuracy measured without superposition — above 0.8 is good. Each bar counts how many structures fall in that range.
Take-home: median TM-score 0.947 — most predictions match the experimental fold well, with a long tail that do not.
Read moreShow less — how each metric is calculated
TM-score: overall shape match, 0–1 (above 0.5 = same fold, above 0.9 near-identical), length-normalised. TM = (1/L) Σᵢ 1/(1 + (dᵢ/d₀)²) with dᵢ the aligned-Cα gap after superposition and d₀ = 1.24(L−15)^⅓ − 1.8. Ref: Zhang & Skolnick, Proteins 2004 doi:10.1002/prot.20264.
Cα-RMSD: the average straight-line distance between matching backbone Cα atoms once the two structures are best-fit superposed (Å; lower is better, under ~2 Å excellent). RMSD = √( (1/N) Σᵢ |Pᵢ − (R·Qᵢ + t)|² ), with Pᵢ/Qᵢ the experimental/model Cα coordinates and R,t the rotation and translation from Kabsch superposition.
lDDT: local accuracy with no superposition — the fraction of short-range inter-residue distances the model reproduces, so it is not fooled by a single wrongly-placed domain. lDDT = (1/N) Σᵢ ¼ Σ_t 1[ |d_exp − d_model| < t ] over thresholds t ∈ {0.5, 1, 2, 4} Å and all residue pairs within 15 Å.
Trend over time
The blue line is the mean TM-score of the structures by their deposit month; the red bars count how many were confidently wrong. Binning by deposit date (rather than by when we processed them) gives an even timeline, tracking whether AlphaFold's accuracy on newly-deposited structures is holding steady, improving, or slipping as the PDB keeps growing. Months with fewer than 5 structures are omitted so each point is a meaningful average. A dashed trend line is drawn only if the change over time is statistically significant.
Read moreShow less — how each metric is calculated
Mean TM-score: the month's average shape-match score. TM̄ = (1/M) Σ TM over the M structures deposited that month.
Trend line: a monotonic-trend test over the monthly means — Mann-Kendall (Kendall's τ) for significance, with a robust Theil-Sen slope for the line. Rank-based, so it tolerates the skewed TM distribution and noisy low-count months. Shown only when p < 0.05; otherwise a note reports that no significant trend was found.
Confidently wrong: the count that were both confident and wrong. count( mean pLDDT > 70 AND TM < 0.5 ).
Matched structures
| PDB | UniProt | Protein | Method | Å | Deposited | Novelty % | pLDDT | TM | lDDT | GDT_TS | RMSD | FRAUD | Flag |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7M4R_A | Q8N3R9 | MAGUK p55 subfamily member 5 | EM | 3.65 | 2021-03-22 | 0.30 | 91.73 | 0.59 | 0.79 | 2.85 | 20.78 | 0.81 | ok |
| 7DVQ_v | Q9BWG6 | Sodium channel modifier 1 | EM | 2.89 | 2021-01-14 | 100.00 novel | 83.52 | 0.46 | 0.85 | 1.89 | 25.05 | 0.78 | wrong |
| 7K02_A | Q16611 | Bcl-2 homologous antagonist/killer | X-ray | 3.40 | 2020-09-02 | 0.00 | 86.57 | 0.53 | 0.81 | 5.71 | 19.34 | 0.71 | ok |
| 7DVQ_9 | Q13356 | RING-type E3 ubiquitin-protein ligase PPIL | EM | 2.89 | 2021-01-14 | 0.00 | 86.91 | 0.49 | 0.91 | 3.36 | 15.05 | 0.71 | wrong |
| 7DVQ_V | Q9HCG8 | Pre-mRNA-splicing factor CWC22 homolog | EM | 2.89 | 2021-01-14 | 0.00 | 89.74 | 0.61 | 0.96 | 8.33 | 11.17 | 0.59 | ok |
| 7DVQ_J | Q9BZJ0 | Crooked neck-like protein 1 | EM | 2.89 | 2021-01-14 | 0.00 | 88.30 | 0.67 | 0.56 | 14.89 | 12.64 | 0.54 | ok |
| 7DVQ_M | O15541 | RING finger protein 113A | EM | 2.89 | 2021-01-14 | 57.20 | 81.86 | 0.48 | 0.84 | 16.62 | 10.26 | 0.47 | wrong |
| 7DVQ_R | Q13573 | SNW domain-containing protein 1 | EM | 2.89 | 2021-01-14 | 0.00 | 83.33 | 0.62 | 0.87 | 16.29 | 9.73 | 0.44 | ok |
| 7BRJ_L | P01160 | Urodilatin | X-ray | 2.70 | 2020-03-29 | 0.00 | 60.16 | 0.20 | 0.51 | 27.27 | 6.79 | 0.24 | ok |
| 7BRH_L | P01160 | Natriuretic peptides A | X-ray | 2.45 | 2020-03-29 | 0.00 | 59.68 | 0.17 | 0.49 | 30.00 | 6.98 | 0.24 | ok |
| 6Y9H_L | P00734 | Prothrombin | X-ray | 1.48 | 2020-03-09 | — | 83.94 | 0.72 | — | — | — | 0.24 | ok |
| 6YB6_L | P00734 | Prothrombin | X-ray | 1.33 | 2020-03-16 | — | 83.94 | 0.72 | — | — | — | 0.23 | ok |
| 7DVQ_A | Q6P2Q9 | Pre-mRNA-processing-splicing factor 8 | EM | 2.89 | 2021-01-14 | — | 84.94 | 0.74 | — | — | — | 0.22 | ok |
| 7DVQ_5 | Q9Y3B4 | Splicing factor 3B subunit 6 | EM | 2.89 | 2021-01-14 | — | 90.12 | 0.75 | — | — | — | 0.22 | ok |
| 7DVQ_P | Q9P013 | Spliceosome-associated protein CWC15 homol | EM | 2.89 | 2021-01-14 | — | 74.88 | 0.71 | — | — | — | 0.22 | ok |
| 7BRK_L | P01160 | Natriuretic peptides A | X-ray | 2.85 | 2020-03-29 | 0.00 | 60.26 | 0.14 | 0.52 | 34.78 | 5.95 | 0.21 | ok |
| 7DVQ_0 | Q9P021 | Cysteine-rich PDZ-binding protein | EM | 2.89 | 2021-01-14 | 100.00 novel | 78.67 | 0.66 | 0.70 | 42.00 | 5.24 | 0.21 | ok |
| 7DVQ_2 | Q13435 | Splicing factor 3B subunit 2 | EM | 2.89 | 2021-01-14 | — | 65.69 | 0.70 | — | — | — | 0.20 | ok |
| 7BP9_A | P55072 | Transitional endoplasmic reticulum ATPase | EM | 3.60 | 2020-03-21 | — | 82.56 | 0.79 | — | — | — | 0.18 | ok |
| 7BPA_A | P55072 | Transitional endoplasmic reticulum ATPase | EM | 3.30 | 2020-03-21 | — | 82.56 | 0.79 | — | — | — | 0.17 | ok |
| 7BP8_A | P55072 | Transitional endoplasmic reticulum ATPase | EM | 3.90 | 2020-03-21 | — | 82.56 | 0.79 | — | — | — | 0.17 | ok |
| 7DVQ_7 | Q9BWJ5 | Splicing factor 3B subunit 5 | EM | 2.89 | 2021-01-14 | — | 91.62 | 0.82 | — | — | — | 0.17 | ok |
| 7BPB_A | P55072 | Transitional endoplasmic reticulum ATPase | EM | 4.30 | 2020-03-22 | — | 82.56 | 0.80 | — | — | — | 0.17 | ok |
| 7DVQ_Z | Q9BRD0 | BUD13 homolog | EM | 2.89 | 2021-01-14 | — | 59.94 | 0.74 | — | — | — | 0.16 | ok |
| 7NE0_C | Q6NW40 | Repulsive Guidance Molecule B | X-ray | 3.25 | 2021-02-02 | 3.00 | 89.47 | 0.40 | 0.81 | 71.67 | 3.95 | 0.13 | wrong |
| 7NDG_M | Q6NW40 | RGM domain family member B | EM | 5.98 | 2021-02-01 | 2.50 | 89.47 | 0.40 | 0.81 | 71.67 | 3.95 | 0.13 | wrong |
| 7DVQ_1 | O75533 | Splicing factor 3B subunit 1 | EM | 2.89 | 2021-01-14 | — | 74.81 | 0.84 | — | — | — | 0.12 | ok |
| 7DVQ_K | Q9H6L4 | Armadillo repeat-containing protein 7 | EM | 2.89 | 2021-01-14 | — | 88.56 | 0.87 | — | — | — | 0.12 | ok |
| 7DVQ_4 | Q15427 | Splicing factor 3B subunit 4 | EM | 2.89 | 2021-01-14 | — | 73.19 | 0.86 | — | — | — | 0.10 | ok |
| 7DVQ_b | P14678 | Small nuclear ribonucleoprotein-associated | EM | 2.89 | 2021-01-14 | — | 69.50 | 0.86 | — | — | — | 0.10 | ok |
| 6WA2_A | P00533 | Epidermal growth factor receptor | X-ray | 2.40 | 2020-03-24 | — | 75.94 | 0.88 | — | — | — | 0.09 | ok |
| 7DVQ_y | Q92917 | G-patch domain and KOW motifs-containing p | EM | 2.89 | 2021-01-14 | 100.00 novel | 56.09 | 0.34 | 0.77 | 53.85 | 2.56 | 0.09 | ok |
| 7KFZ_A | P01116 | GTPase KRas | EM | 3.47 | 2020-10-15 | — | 91.50 | 0.90 | — | — | — | 0.09 | ok |
| 6W5M_D | Q9UBL3 | Set1/Ash2 histone methyltransferase comple | EM | 4.60 | 2020-03-13 | — | 75.25 | 0.88 | — | — | — | 0.09 | ok |
| 6W5I_D | Q9UBL3 | Set1/Ash2 histone methyltransferase comple | EM | 6.90 | 2020-03-13 | — | 75.25 | 0.88 | — | — | — | 0.09 | ok |
| 6WAK_A | P00533 | Epidermal growth factor receptor | X-ray | 2.40 | 2020-03-25 | — | 75.94 | 0.89 | — | — | — | 0.09 | ok |
| 7D0E_B | Q9ULG6 | Cell cycle progression protein 1 FIR2 | X-ray | 1.40 | 2020-09-09 | — | 51.62 | 0.29 | 0.68 | 56.82 | 2.82 | 0.09 | ok |
| 6W5N_D | Q9UBL3 | Set1/Ash2 histone methyltransferase comple | EM | 6.00 | 2020-03-13 | — | 75.25 | 0.89 | — | — | — | 0.09 | ok |
| 7KFK_A | Q8NHL6 | Isoform 2 of Leukocyte immunoglobulin-like | X-ray | 2.63 | 2020-10-14 | — | 73.38 | 0.89 | — | — | — | 0.08 | ok |
| 7DVQ_Y | Q9Y388 | RNA-binding motif protein, X-linked 2 | EM | 2.89 | 2021-01-14 | — | 63.66 | 0.87 | — | — | — | 0.08 | ok |
| 7DVQ_d | P62316 | Small nuclear ribonucleoprotein Sm D2 | EM | 2.89 | 2021-01-14 | — | 90.62 | 0.91 | — | — | — | 0.08 | ok |
| 7DVQ_U | Q9UQ35 | Serine/arginine repetitive matrix protein | EM | 2.89 | 2021-01-14 | 0.00 | 81.26 | 0.52 | 0.83 | 78.85 | 2.07 | 0.08 | ok |
| 7DVQ_8 | Q8IYB3 | Serine/arginine repetitive matrix protein | EM | 2.89 | 2021-01-14 | — | 51.62 | 0.87 | — | — | — | 0.07 | ok |
| 7NE0_A | O95631 | Netrin-1 | X-ray | 3.25 | 2021-02-02 | — | 88.50 | 0.93 | — | — | — | 0.06 | ok |
| 6YB6_H | P00734 | Prothrombin | X-ray | 1.33 | 2020-03-16 | — | 83.94 | 0.92 | — | — | — | 0.06 | ok |
| 6Y9H_H | P00734 | Prothrombin | X-ray | 1.48 | 2020-03-09 | — | 83.94 | 0.92 | — | — | — | 0.06 | ok |
| 7DFL_R | P35367 | Histamine H1 receptor | EM | 3.30 | 2020-11-09 | — | 69.94 | 0.91 | — | — | — | 0.06 | ok |
| 7DVQ_x | O60231 | Pre-mRNA-splicing factor ATP-dependent RNA | EM | 2.89 | 2021-01-14 | — | 77.69 | 0.93 | — | — | — | 0.06 | ok |
| 6Y7J_A | Q9H8M2 | Bromodomain-containing protein 9 | X-ray | 1.60 | 2020-03-01 | — | 62.97 | 0.91 | — | — | — | 0.06 | ok |
| 6Y7K_A | Q9H8M2 | Bromodomain-containing protein 9 | X-ray | 1.20 | 2020-03-01 | — | 62.97 | 0.91 | — | — | — | 0.06 | ok |
| 7KFZ_B | Q07889 | Son of sevenless homolog 1 | EM | 3.47 | 2020-10-15 | — | 76.38 | 0.93 | — | — | — | 0.06 | ok |
| 7NDG_A | O95631 | Netrin-1 | EM | 5.98 | 2021-02-01 | — | 88.50 | 0.94 | — | — | — | 0.05 | ok |
| 6WQU_D | Q9UM47 | Neurogenic locus notch homolog protein 3 | X-ray | 2.41 | 2020-04-29 | — | 25.46 | 0.24 | 0.74 | 50.00 | 3.15 | 0.05 | ok |
| 6Y7I_A | Q9H8M2 | Bromodomain-containing protein 9 | X-ray | 1.60 | 2020-03-01 | — | 62.97 | 0.92 | — | — | — | 0.05 | ok |
| 7NE0_D | Q6NW40 | Repulsive Guidance Molecule B C-terminal r | X-ray | 3.25 | 2021-02-02 | — | 79.44 | 0.94 | — | — | — | 0.05 | ok |
| 6Y7H_A | Q9H8M2 | Bromodomain-containing protein 9 | X-ray | 1.80 | 2020-03-01 | — | 62.97 | 0.92 | — | — | — | 0.05 | ok |
| 7DWX_B | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 8.30 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.05 | ok |
| 6Y7L_A | Q9H8M2 | Bromodomain-containing protein 9 | X-ray | 1.80 | 2020-03-01 | — | 62.97 | 0.92 | — | — | — | 0.05 | ok |
| 7JUP_A | O75762 | Transient receptor potential cation channe | EM | 3.05 | 2020-08-20 | — | 81.94 | 0.95 | — | — | — | 0.04 | ok |
| 7D0E_A | Q8TDY2 | RB1-inducible coiled-coil protein 1 | X-ray | 1.40 | 2020-09-09 | — | 72.50 | 0.94 | — | — | — | 0.04 | ok |
| 6Y7T_A | P31947 | 14-3-3 protein sigma | X-ray | 2.50 | 2020-03-02 | — | 92.88 | 0.95 | — | — | — | 0.04 | ok |
| 6L71_A | Q8IXJ6 | NAD-dependent protein deacetylase sirtuin- | X-ray | 2.11 | 2019-10-30 | 0.00 | 92.82 | 0.98 | 0.96 | 95.27 | 1.00 | 0.04 | ok |
| 7DX9_D | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 3.60 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DX8_D | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 2.90 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DX7_D | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 3.40 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DX6_D | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 3.00 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DX5_D | Q9BYF1 | Angiotensin-converting enzyme 2 | EM | 3.30 | 2021-01-18 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DVQ_g | P62308 | Small nuclear ribonucleoprotein G | EM | 2.89 | 2021-01-14 | — | 93.25 | 0.95 | — | — | — | 0.04 | ok |
| 7LO4_A | Q9BYF1 | Processed angiotensin-converting enzyme 2 | X-ray | 2.46 | 2021-02-09 | — | 90.69 | 0.95 | — | — | — | 0.04 | ok |
| 7DVQ_X | Q8TAD8 | Smad nuclear-interacting protein 1 | EM | 2.89 | 2021-01-14 | — | 66.06 | 0.94 | — | — | — | 0.04 | ok |
| 7DVQ_L | Q99459 | Cell division cycle 5-like protein | EM | 2.89 | 2021-01-14 | — | 74.31 | 0.94 | — | — | — | 0.04 | ok |
| 7DFL_G | P59768 | Guanine nucleotide-binding protein G(I)/G( | EM | 3.30 | 2020-11-09 | — | 89.56 | 0.96 | — | — | — | 0.04 | ok |
| 6L72_A | Q8IXJ6 | NAD-dependent protein deacetylase sirtuin- | X-ray | 2.50 | 2019-10-30 | 0.00 | 93.02 | 0.98 | 0.96 | 95.66 | 0.87 | 0.04 | ok |
| 7DVQ_I | Q5RL73 | RNA-binding protein 48 | EM | 2.89 | 2021-01-14 | — | 67.75 | 0.95 | — | — | — | 0.04 | ok |
| 7NDG_C | Q6NW40 | Repulsive Guidance Molecule B (C-terminal | EM | 5.98 | 2021-02-01 | — | 79.44 | 0.96 | — | — | — | 0.04 | ok |
| 6L23_A | P68400 | Casein kinase II subunit alpha | X-ray | 1.97 | 2019-10-02 | 0.30 | 97.00 | 0.99 | 0.96 | 96.11 | 0.91 | 0.03 | ok |
| 7DVQ_a | P62318 | Small nuclear ribonucleoprotein Sm D3 | EM | 2.89 | 2021-01-14 | — | 82.81 | 0.96 | — | — | — | 0.03 | ok |
| 6YDZ_A | Q86WV6 | Stimulator of interferon protein | X-ray | 2.90 | 2020-03-23 | — | 83.75 | 0.96 | — | — | — | 0.03 | ok |
| 6YE9_A | P31947 | 14-3-3 protein sigma | X-ray | 1.80 | 2020-03-24 | — | 92.88 | 0.97 | — | — | — | 0.03 | ok |
| 7BEV_A | Q07617 | Sperm-associated antigen 1 | NMR | — | 2020-12-29 | — | 73.69 | 0.96 | — | — | — | 0.03 | ok |
| 6YDB_A | Q86WV6 | Stimulator of interferon protein | X-ray | 2.80 | 2020-03-20 | — | 83.75 | 0.97 | — | — | — | 0.03 | ok |
| 6Y99_A | Q86WV6 | Stimulator of interferon genes protein | X-ray | 2.98 | 2020-03-06 | — | 83.75 | 0.97 | — | — | — | 0.03 | ok |
| 7CZM_A | Q8TDY2 | RB1-inducible coiled-coil protein 1 | X-ray | 2.00 | 2020-09-09 | — | 72.50 | 0.96 | — | — | — | 0.03 | ok |
| 7CZG_A | Q8TDY2 | RB1-inducible coiled-coil protein 1 | X-ray | 1.80 | 2020-09-08 | — | 72.50 | 0.96 | — | — | — | 0.03 | ok |
| 6Y7G_A | Q96E17 | Ras-related protein Rab-3C | X-ray | 2.30 | 2020-02-29 | — | 82.62 | 0.97 | — | — | — | 0.03 | ok |
| 6YEA_A | Q86WV6 | Stimulator of interferon protein | X-ray | 2.81 | 2020-03-24 | — | 83.75 | 0.97 | — | — | — | 0.03 | ok |
| 7DVQ_e | P62304 | Small nuclear ribonucleoprotein E | EM | 2.89 | 2021-01-14 | — | 90.75 | 0.97 | — | — | — | 0.02 | ok |
| 6Y6R_A | Q8N5J2 | Ubiquitin carboxyl-terminal hydrolase MIND | X-ray | 3.32 | 2020-02-27 | — | 72.69 | 0.97 | — | — | — | 0.02 | ok |
| 7DVQ_f | P62306 | Small nuclear ribonucleoprotein F | EM | 2.89 | 2021-01-14 | — | 90.50 | 0.98 | — | — | — | 0.02 | ok |
| 7BPH_A | P63092 | Guanine nucleotide-binding protein G(s) su | X-ray | 1.57 | 2020-03-22 | — | 91.31 | 0.98 | — | — | — | 0.02 | ok |
| 7DWX_A | Q695T7 | Sodium-dependent neutral amino acid transp | EM | 8.30 | 2021-01-18 | — | 90.00 | 0.98 | — | — | — | 0.02 | ok |
| 7DVQ_C | Q15029 | 116 kDa U5 small nuclear ribonucleoprotein | EM | 2.89 | 2021-01-14 | — | 89.94 | 0.98 | — | — | — | 0.02 | ok |
| 7NE1_A | O95631 | Netrin-1 | X-ray | 3.15 | 2021-02-02 | — | 88.50 | 0.98 | — | — | — | 0.02 | ok |
| 7D2V_A | P56817 | Beta-secretase 1 | X-ray | 2.10 | 2020-09-17 | — | 87.50 | 0.98 | — | — | — | 0.02 | ok |
| 6Y8P_A | E5BBQ0 | O6-alkylguanine-DNA alkyltransferase mutan | X-ray | 2.30 | 2020-03-05 | — | 90.50 | 0.98 | — | — | — | 0.02 | ok |
| 7DVQ_c | P62314 | Small nuclear ribonucleoprotein Sm D1 | EM | 2.89 | 2021-01-14 | — | 82.81 | 0.98 | — | — | — | 0.02 | ok |
| 7DVQ_3 | Q15393 | Splicing factor 3B subunit 3 | EM | 2.89 | 2021-01-14 | — | 92.25 | 0.98 | — | — | — | 0.02 | ok |
| 6W5I_A | Q15291 | Retinoblastoma-binding protein 5 | EM | 6.90 | 2020-03-13 | — | 77.75 | 0.98 | — | — | — | 0.02 | ok |
| 7DVQ_6 | Q7RTV0 | PHD finger-like domain-containing protein | EM | 2.89 | 2021-01-14 | — | 89.88 | 0.98 | — | — | — | 0.02 | ok |
| 6W5N_A | Q15291 | Retinoblastoma-binding protein 5 | EM | 6.00 | 2020-03-13 | — | 77.75 | 0.98 | — | — | — | 0.01 | ok |
| 6XIY_A | Q8IUN9 | C-type lectin domain family 10 member A | X-ray | 2.31 | 2020-06-22 | — | 80.44 | 0.98 | — | — | — | 0.01 | ok |
| 7DFL_B | P62873 | Guanine nucleotide-binding protein G(I)/G( | EM | 3.30 | 2020-11-09 | — | 97.06 | 0.99 | — | — | — | 0.01 | ok |
| 7DVQ_D | O75643 | U5 small nuclear ribonucleoprotein 200 kDa | EM | 2.89 | 2021-01-14 | — | 82.75 | 0.98 | — | — | — | 0.01 | ok |
| 7D2X_A | P56817 | Beta-secretase 1 | X-ray | 2.45 | 2020-09-17 | — | 87.50 | 0.99 | — | — | — | 0.01 | ok |
| 6W5M_A | Q15291 | Retinoblastoma-binding protein 5 | EM | 4.60 | 2020-03-13 | — | 77.75 | 0.99 | — | — | — | 0.01 | ok |
| 7D5U_A | Q9Y5Z0 | Beta-secretase 2 | X-ray | 2.04 | 2020-09-28 | — | 82.69 | 0.99 | — | — | — | 0.01 | ok |
| 7D5A_A | P56817 | Beta-secretase 1 | X-ray | 2.20 | 2020-09-25 | — | 87.50 | 0.99 | — | — | — | 0.01 | ok |
| 7LJ9_A | P53396 | ATP-citrate synthase | EM | 3.00 | 2021-01-28 | — | 92.25 | 0.99 | — | — | — | 0.01 | ok |
| 7DVQ_z | Q6UX04 | Peptidyl-prolyl cis-trans isomerase CWC27 | EM | 2.89 | 2021-01-14 | — | 73.56 | 0.99 | — | — | — | 0.01 | ok |
| 7E4T_A | Q9UL62 | Short transient receptor potential channel | EM | 3.00 | 2021-02-15 | — | 73.19 | 0.99 | — | — | — | 0.01 | ok |
| 7D4Q_A | Q9UL62 | Short transient receptor potential channel | EM | 2.74 | 2020-09-24 | — | 73.19 | 0.99 | — | — | — | 0.01 | ok |
| 7D4P_A | Q9UL62 | Short transient receptor potential channel | EM | 2.70 | 2020-09-24 | — | 73.19 | 0.99 | — | — | — | 0.01 | ok |
| 7JG0_A | P22102 | Trifunctional purine biosynthetic protein | X-ray | 1.98 | 2020-07-18 | — | 92.75 | 0.99 | — | — | — | 0.01 | ok |
| 6W5N_B | P61964 | WD repeat-containing protein 5 | EM | 6.00 | 2020-03-13 | — | 93.31 | 0.99 | — | — | — | 0.01 | ok |
| 6W5I_B | P61964 | WD repeat-containing protein 5 | EM | 6.90 | 2020-03-13 | — | 93.31 | 0.99 | — | — | — | 0.01 | ok |
| 6W5M_B | P61964 | WD repeat-containing protein 5 | EM | 4.60 | 2020-03-13 | — | 93.31 | 0.99 | — | — | — | 0.01 | ok |
| 7JG3_A | P22102 | Trifunctional purine biosynthetic protein | X-ray | 2.09 | 2020-07-18 | — | 92.75 | 0.99 | — | — | — | 0.01 | ok |
| 7D5B_A | Q9Y5Z0 | Beta-secretase 2 | X-ray | 1.31 | 2020-09-25 | — | 82.69 | 0.99 | — | — | — | 0.01 | ok |
| 7JG4_A | P22102 | Trifunctional purine biosynthetic protein | X-ray | 2.46 | 2020-07-18 | — | 92.75 | 0.99 | — | — | — | 0.01 | ok |
| 7DVQ_E | Q96DI7 | U5 small nuclear ribonucleoprotein 40 kDa | EM | 2.89 | 2021-01-14 | — | 85.25 | 0.99 | — | — | — | 0.01 | ok |
| 7EA9_A | Q15046 | Lysine--tRNA ligase | X-ray | 2.50 | 2021-03-06 | — | 90.50 | 0.99 | — | — | — | 0.01 | ok |
| 7DVQ_T | O43660 | Pleiotropic regulator 1 | EM | 2.89 | 2021-01-14 | — | 77.38 | 0.99 | — | — | — | 0.00 | ok |
| 6YRI_A | P00918 | Carbonic anhydrase 2 | X-ray | 1.60 | 2020-04-20 | — | 97.38 | 1.00 | — | — | — | 0.00 | ok |
| 6WVO_A | P22303 | Acetylcholinesterase | X-ray | 2.19 | 2020-05-06 | — | 92.94 | 1.00 | — | — | — | 0.00 | ok |
Click a column header to sort. FRAUD = confidence-weighted error; a structure is flagged confidently wrong when mean pLDDT > 70 yet TM-score < 0.5.