36AD_A
Fumarate hydratase, mitochondrial · P07954 · RCSB 36AD · AF-P07954-F1 (v6)
0.9982
TM-score
0.9957
lDDT
0.481
Cα-RMSD Å
98.25
mean pLDDT
0.0183
FRAUD score
100.0%
novelty (max id)
Per-domain breakdown
| Source | Domain | Range | Residues | TM | RMSD Å | mean Cα Δ | Name |
|---|---|---|---|---|---|---|---|
| PAE | PAE:1-510 | 1-510 | 456 | 0.9972 | 0.481 | 0.284 |
All metrics
Global fold agreement
| TM-score (norm. experiment) | 0.9982 |
| TM-score (norm. model) | 0.8927 |
| TM-score (norm. shorter) | 0.9982 |
| TM-score (norm. longer) | 0.8927 |
| Cα-RMSD (Å) | 0.481 |
| backbone-RMSD (Å) | 0.525 |
| all-atom-RMSD (Å) | 0.717 |
| core-RMSD (Å) | 0.313 |
| core fraction | 0.998 |
| GDT_TS | 99.78 |
| GDT_HA | 97.37 |
| MaxSub | 0.9983 |
| structural overlap (3.5 Å) | 0.9978 |
Local, superposition-free
| lDDT | 0.9957 |
| contact-map Jaccard | 0.9449 |
| contact precision | 0.9647 |
| contact recall | 0.9788 |
| distance-matrix mean Δ (Å) | 0.178 |
| CAD-score (approx) | 0.2779 |
Backbone & secondary structure
| SS agreement Q3 (%) | 96.71 |
| mean Δφ (°) | 4.9 |
| mean Δψ (°) | 5.5 |
| torsion within 30° (frac) | 0.989 |
| Rg experiment (Å) | 30.3 |
| Rg model (Å) | 30.23 |
| ΔRg (Å) | 0.06 |
Confidence calibration
| mean pLDDT | 98.25 |
| pLDDT↔lDDT Pearson | 0.7062 |
| pLDDT↔lDDT Spearman | 0.3386 |
| PAE↔observed Pearson | 0.3388 |
| PAE overconfident frac | 0.0003 |
| mean PAE (Å) | 3.037 |
| mean observed error (Å) | 0.178 |
Context & headline
| coverage of model | 0.8941 |
| coverage of experiment | 1.0 |
| seq identity aligned (%) | 100.0 |
| confidently-wrong residue frac | 0.0022 |
| FRAUD score | 0.0183 |
Deposited 2026-05-27 · released 2026-06-10 · X-ray · 2.11 Å · closest pre-cutoff chain: 3E04_1