13BV_D
Beclin-1 · Q14457 · RCSB 13BV · AF-Q14457-F1 (v6)
0.8016
TM-score
0.9213
lDDT
4.179
Cα-RMSD Å
88.73
mean pLDDT
0.2151
FRAUD score
100.0%
novelty (max id)
Per-domain breakdown
| Source | Domain | Range | Residues | TM | RMSD Å | mean Cα Δ | Name |
|---|---|---|---|---|---|---|---|
| PAE | PAE:1-450 | 1-450 | 305 | 0.756 | 4.179 | 3.687 |
All metrics
Global fold agreement
| TM-score (norm. experiment) | 0.8016 |
| TM-score (norm. model) | 0.5664 |
| TM-score (norm. shorter) | 0.8016 |
| TM-score (norm. longer) | 0.5664 |
| Cα-RMSD (Å) | 4.179 |
| backbone-RMSD (Å) | 4.137 |
| all-atom-RMSD (Å) | 4.55 |
| core-RMSD (Å) | 1.262 |
| core fraction | 0.41 |
| GDT_TS | 45.16 |
| GDT_HA | 21.23 |
| MaxSub | 0.8656 |
| structural overlap (3.5 Å) | 0.5475 |
Local, superposition-free
| lDDT | 0.9213 |
| contact-map Jaccard | 0.815 |
| contact precision | 0.8966 |
| contact recall | 0.8997 |
| distance-matrix mean Δ (Å) | 1.46 |
| CAD-score (approx) | 0.8292 |
Backbone & secondary structure
| SS agreement Q3 (%) | 89.51 |
| mean Δφ (°) | 11.0 |
| mean Δψ (°) | 15.2 |
| torsion within 30° (frac) | 0.8328 |
| Rg experiment (Å) | 65.17 |
| Rg model (Å) | 66.09 |
| ΔRg (Å) | 0.91 |
Confidence calibration
| mean pLDDT | 88.73 |
| pLDDT↔lDDT Pearson | 0.7103 |
| pLDDT↔lDDT Spearman | 0.7202 |
| PAE↔observed Pearson | 0.5518 |
| PAE overconfident frac | 0.0 |
| mean PAE (Å) | 14.23 |
| mean observed error (Å) | 1.455 |
Context & headline
| coverage of model | 0.6778 |
| coverage of experiment | 1.0 |
| seq identity aligned (%) | 100.0 |
| confidently-wrong residue frac | 0.318 |
| FRAUD score | 0.2151 |
Deposited 2026-04-28 · released 2026-05-13 · EM · 3.77 Å · closest pre-cutoff chain: 4DDP_1